If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 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'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 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'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 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'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 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'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 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'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ), 'gf_id' => 'HOM05D000664', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000664' ), 'data_identifier' => 'HOM05D000664', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000664', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '861', 'num_species' => '77' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p03390' => 'bna', 'A03p03400' => 'bna', 'Aa31LG3G18820' => 'aar', 'Actinidia06300' => 'ach', 'Actinidia13606' => 'ach', 'Actinidia26386' => 'ach', 'Actinidia31673' => 'ach', 'Actinidia31674' => 'ach', 'Actinidia31675' => 'ach', 'Actinidia38737' => 'ach', 'Ah.04g163020' => 'amhyb', 'Ah.12g054240' => 'amhyb', 'Ah.12g054250' => 'amhyb', 'AL6G17920' => 'aly', 'Aqoxy2G01152' => 'aox', 'Aqoxy4G02867' => 'aox', 'Aqoxy5G01770' => 'aox', 'Aqoxy5G02609' => 'aox', 'Aqoxy6G00425' => 'aox', 'Aqoxy6G00426' => 'aox', 'Aqoxy7G02711' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3T4KA9' => 'arhy', 'AT5G07610' => 'ath', 'Atru.chr1.869' => 'acertr', 'Atru.chr1.870' => 'acertr', 'Atru.chr1.874' => 'acertr', 'Atru.chr1.884' => 'acertr', 'Atru.chr1.895' => 'acertr', 'Atru.chr2.3587' => 'acertr', 'AUR62004782' => 'cqu', 'AUR62007095' => 'cqu', 'AUR62007096' => 'cqu', 'AUR62007097' => 'cqu', 'AUR62007098' => 'cqu', 'AUR62007099' => 'cqu', 'AUR62012380' => 'cqu', 'AUR62019959' => 'cqu', 'AUR62019960' => 'cqu', 'AUR62019961' => 'cqu', 'AUR62019962' => 'cqu', 'AUR62019976' => 'cqu', 'AUR62029566' => 'cqu', 'AUR62031522' => 'cqu', 'AUR62041427' => 'cqu', 'BcaB01g05705' => 'bca', 'BcaB01g06052' => 'bca', 'BcaB01g06053' => 'bca', 'BolC3t12918H' => 'bol', 'BolC3t12919H' => 'bol', 'BraA03t09690Z' => 'bra', 'C03p03830' => 'bna', 'C03p03840' => 'bna', 'CAN.G1891.7' => 'can', 'CAN.G1891.8' => 'can', 'CAN.G1891.9' => 'can', 'CAN.G231.31' => 'can', 'CAN.G231.32' => 'can', 'CAN.G375.27' => 'can', 'CAN.G375.29' => 'can', 'CAN.G407.34' => 'can', 'CAN.G407.35' => 'can', 'CAN.G467.4' => 'can', 'CAN.G54.4' => 'can', 'CAN.G937.10' => 'can', 'CANSAT56G0304' => 'cansat', 'CANSAT56G0364' => 'cansat', 'CANSAT56G0713' => 'cansat', 'CANSAT56G1457' => 'cansat', 'CARHR205550' => 'chi', 'Carub.0006s0659' => 'cru', 'Cc00_g00720' => 'ccan', 'Cc00_g00730' => 'ccan', 'Cc00_g00750' => 'ccan', 'Cc00_g14130' => 'ccan', 'Cc01_g02550' => 'ccan', 'Cc02_g04650' => 'ccan', 'Cc06_g12830' => 'ccan', 'Cc06_g22190' => 'ccan', 'Cc06_g22290' => 'ccan', 'Cc06_g22300' => 'ccan', 'Cc06_g22330' => 'ccan', 'Cc06_g22350' => 'ccan', 'Cc06_g22360' => 'ccan', 'Cc06_g22370' => 'ccan', 'Cc06_g22380' => 'ccan', 'Cc06_g22390' => 'ccan', 'CDE04G2855' => 'cde', 'Cfa020730' => 'cfa', 'Ciclev10005086m.g' => 'ccl', 'Ciclev10005090m.g' => 'ccl', 'Ciclev10005096m.g' => 'ccl', 'Ciclev10005097m.g' => 'ccl', 'Ciclev10006275m.g' => 'ccl', 'Ciclev10006867m.g' => 'ccl', 'Ciclev10006870m.g' => 'ccl', 'CiPaw.01G207700' => 'cil', 'CiPaw.15G154900' => 'cil', 'CiPaw.15G155000' => 'cil', 'ClCG01G004670' => 'cla', 'COL.COLO4_08922' => 'col', 'COL.COLO4_08936' => 'col', 'COL.COLO4_08939' => 'col', 'COL.COLO4_09299' => 'col', 'COL.COLO4_09300' => 'col', 'COL.COLO4_13626' => 'col', 'COL.COLO4_29637' => 'col', 'COL.COLO4_29641' => 'col', 'COL.COLO4_31760' => 'col', 'COL.COLO4_31801' => 'col', 'COL.COLO4_32988' => 'col', 'COL.COLO4_32995' => 'col', 'COL.COLO4_32997' => 'col', 'COL.COLO4_32998' => 'col', 'COL.COLO4_32999' => 'col', 'COL.COLO4_36187' => 'col', 'COL.COLO4_36189' => 'col', 'COL.COLO4_37345' => 'col', 'COL.COLO4_37347' => 'col', 'COL.COLO4_37348' => 'col', 'COL.COLO4_37349' => 'col', 'COL.COLO4_37350' => 'col', 'COL.COLO4_37351' => 'col', 'COL.COLO4_37360' => 'col', 'COL.COLO4_37361' => 'col', 'COL.COLO4_37362' => 'col', 'COL.COLO4_37363' => 'col', 'COL.COLO4_37365' => 'col', 'COL.COLO4_37366' => 'col', 'COL.COLO4_37367' => 'col', 'COL.COLO4_37368' => 'col', 'COL.COLO4_38550' => 'col', 'COL.COLO4_38551' => 'col', 'COL.COLO4_38552' => 'col', 'COL.COLO4_38554' => 'col', 'COL.COLO4_38558' => 'col', 'Cpa.g.sc115.41' => 'cpa', 'Cpa.g.sc13.265' => 'cpa', 'CsaV3_5G004870' => 'csa', 'CSS0003240' => 'camsi', 'CSS0004085' => 'camsi', 'CSS0006010' => 'camsi', 'CSS0006618' => 'camsi', 'CSS0008769' => 'camsi', 'CSS0011530' => 'camsi', 'CSS0016323' => 'camsi', 'CSS0025692' => 'camsi', 'CSS0027731' => 'camsi', 'CSS0031414' => 'camsi', 'CSS0031662' => 'camsi', 'CSS0035483' => 'camsi', 'CSS0036400' => 'camsi', 'CSS0037447' => 'camsi', 'CSS0044538' => 'camsi', 'DCAR_002650' => 'dca', 'DCAR_003987' => 'dca', 'DCAR_005812' => 'dca', 'DCAR_005935' => 'dca', 'DCAR_012371' => 'dca', 'DCAR_016169' => 'dca', 'DCAR_018079' => 'dca', 'DCAR_018081' => 'dca', 'DCAR_018082' => 'dca', 'DCAR_018083' => 'dca', 'DCAR_018084' => 'dca', 'DCAR_018085' => 'dca', 'DCAR_018806' => 'dca', 'DCAR_021413' => 'dca', 'DCAR_026300' => 'dca', 'DCAR_026305' => 'dca', 'DCAR_026314' => 'dca', 'DCAR_027397' => 'dca', 'DCAR_028594' => 'dca', 'DCAR_029436' => 'dca', 'DCAR_029437' => 'dca', 'DCAR_029438' => 'dca', 'DCAR_029439' => 'dca', 'DCAR_029440' => 'dca', 'DCAR_029441' => 'dca', 'DCAR_029442' => 'dca', 'DCAR_029675' => 'dca', 'Dinv09433' => 'din', 'Dinv16863' => 'din', 'Dinv16864' => 'din', 'Dinv25521' => 'din', 'Dinv26463' => 'din', 'Dinv26464' => 'din', 'Dinv26466' => 'din', 'Duzib068G1024' => 'dzi', 'Duzib093G1017' => 'dzi', 'Duzib106G0771' => 'dzi', 'Duzib106G0797' => 'dzi', 'Duzib106G0932' => 'dzi', 'Duzib106G1172' => 'dzi', 'Duzib106G1358' => 'dzi', 'Duzib106G1902' => 'dzi', 'Duzib106G2017' => 'dzi', 'Duzib128G1119' => 'dzi', 'Duzib128G1279' => 'dzi', 'Duzib128G1574' => 'dzi', 'Duzib177G0141' => 'dzi', 'Duzib177G0294' => 'dzi', 'Duzib177G0364' => 'dzi', 'Duzib177G1036' => 'dzi', 'Duzib177G1102' => 'dzi', 'Duzib177G1156' => 'dzi', 'Duzib205G1254' => 'dzi', 'ECA232G0437' => 'eca', 'ECA232G1499' => 'eca', 'ECA232G2420' => 'eca', 'ECA232G2763' => 'eca', 'ECA232G3527' => 'eca', 'ECA233G1105' => 'eca', 'ECA234G1712' => 'eca', 'ECA234G3302' => 'eca', 'ECA236G0999' => 'eca', 'ECA238G0394' => 'eca', 'ECA238G1559' => 'eca', 'ECA238G1624' => 'eca', 'ECA238G1985' => 'eca', 'ECA238G4824' => 'eca', 'ECA246G0367' => 'eca', 'ECA246G3377' => 'eca', 'ECA247G2779' => 'eca', 'ECA247G3755' => 'eca', 'EL10Ac2g04217' => 'bvu', 'EL10Ac2g04218' => 'bvu', 'EL10Ac5g12381' => 'bvu', 'Eucgr.C02183' => 'egr', 'Eucgr.C02184' => 'egr', 'Eucgr.F04035' => 'egr', 'FAN02G0414' => 'fan', 'FAN02G0794' => 'fan', 'FAN02G0876' => 'fan', 'FAN02G0955' => 'fan', 'FAN02G1216' => 'fan', 'FAN02G1224' => 'fan', 'FAN02G1575' => 'fan', 'FAN02G2193' => 'fan', 'FAN02G3914' => 'fan', 'FAN02G4138' => 'fan', 'FAN02G4514' => 'fan', 'FAN02G4533' => 'fan', 'FAN05G0017' => 'fan', 'FAN05G0407' => 'fan', 'FAN05G0730' => 'fan', 'FAN05G1066' => 'fan', 'FAN05G1881' => 'fan', 'FAN05G4782' => 'fan', 'FAN05G4885' => 'fan', 'FAN05G5626' => 'fan', 'FAN07G0651' => 'fan', 'FAN07G0903' => 'fan', 'FAN07G1045' => 'fan', 'FAN07G1706' => 'fan', 'FAN07G2028' => 'fan', 'FAN07G2069' => 'fan', 'FAN07G2357' => 'fan', 'FAN07G2627' => 'fan', 'FAN09G0982' => 'fan', 'FAN09G1298' => 'fan', 'FAN09G1942' => 'fan', 'FAN09G2451' => 'fan', 'FAN09G2634' => 'fan', 'FAN09G2903' => 'fan', 'FAN09G2913' => 'fan', 'FAN09G3023' => 'fan', 'FAN09G3069' => 'fan', 'FAN09G3133' => 'fan', 'FAN09G3693' => 'fan', 'FAN09G3965' => 'fan', 'FAN09G4012' => 'fan', 'FAN09G4765' => 'fan', 'FAN11G0439' => 'fan', 'FAN12G0986' => 'fan', 'FAN12G1398' => 'fan', 'FAN12G1728' => 'fan', 'FAN12G1801' => 'fan', 'FAN12G1825' => 'fan', 'FAN12G1944' => 'fan', 'FAN12G2918' => 'fan', 'FAN12G3310' => 'fan', 'FAN12G4155' => 'fan', 'FAN12G4320' => 'fan', 'FAN14G0160' => 'fan', 'FAN14G0409' => 'fan', 'FAN14G0754' => 'fan', 'FAN14G1147' => 'fan', 'FAN14G1625' => 'fan', 'FAN14G1724' => 'fan', 'FAN14G2089' => 'fan', 'FAN14G2895' => 'fan', 'FAN14G3142' => 'fan', 'FAN14G3303' => 'fan', 'FAN14G3348' => 'fan', 'FAN14G3826' => 'fan', 'FAN14G3989' => 'fan', 'FAN14G4417' => 'fan', 'FAN14G4425' => 'fan', 'FAN14G4785' => 'fan', 'FAN14G4860' => 'fan', 'FAN16G1475' => 'fan', 'FAN17G0010' => 'fan', 'FAN17G0186' => 'fan', 'FAN17G0956' => 'fan', 'FAN17G1155' => 'fan', 'FAN17G1555' => 'fan', 'FAN17G1795' => 'fan', 'FAN17G1967' => 'fan', 'FAN17G2449' => 'fan', 'FAN17G2477' => 'fan', 'FAN17G2652' => 'fan', 'FAN19G0750' => 'fan', 'FAN21G1670' => 'fan', 'FAN22G0195' => 'fan', 'FAN22G0258' => 'fan', 'FAN22G0437' => 'fan', 'FAN22G0944' => 'fan', 'FAN22G1400' => 'fan', 'FAN22G1828' => 'fan', 'FAN22G2019' => 'fan', 'FAN22G2265' => 'fan', 'FAN22G2412' => 'fan', 'FAN23G1622' => 'fan', 'FAN24G1816' => 'fan', 'FAN26G1209' => 'fan', 'FAN27G0857' => 'fan', 'FAN27G2908' => 'fan', 'FAN28G0256' => 'fan', 'FvH4_1g12890' => 'fve', 'FvH4_2g35920' => 'fve', 'FvH4_2g35930' => 'fve', 'FvH4_2g35940' => 'fve', 'FvH4_2g35950' => 'fve', 'FvH4_3g32490' => 'fve', 'FvH4_3g43790' => 'fve', 'FvH4_4g01370' => 'fve', 'FvH4_4g01410' => 'fve', 'FvH4_4g01420' => 'fve', 'FvH4_4g01430' => 'fve', 'FvH4_4g01472' => 'fve', 'FvH4_4g01490' => 'fve', 'FvH4_4g01521' => 'fve', 'FvH4_4g06280' => 'fve', 'FvH4_4g06290' => 'fve', 'FvH4_4g06300' => 'fve', 'FvH4_4g06310' => 'fve', 'FvH4_4g06320' => 'fve', 'FvH4_4g06330' => 'fve', 'FvH4_4g06350' => 'fve', 'FvH4_4g06360' => 'fve', 'FvH4_4g06370' => 'fve', 'FvH4_4g06960' => 'fve', 'FvH4_4g15770' => 'fve', 'FvH4_6g31140' => 'fve', 'FvH4_6g31150' => 'fve', 'FvH4_6g31161' => 'fve', 'FvH4_6g43941' => 'fve', 'FvH4_6g43961' => 'fve', 'FvH4_6g52062' => 'fve', 'FvH4_6g52080' => 'fve', 'FvH4_6g52610' => 'fve', 'FvH4_6g52830' => 'fve', 'FvH4_6g52861' => 'fve', 'FvH4_6g52862' => 'fve', 'FvH4_6g52871' => 'fve', 'FvH4_6g52880' => 'fve', 'FvH4_6g52931' => 'fve', 'FvH4_6g52941' => 'fve', 'FvH4_6g52942' => 'fve', 'FvH4_6g53001' => 'fve', 'FvH4_6g53021' => 'fve', 'FvH4_6g53072' => 'fve', 'FvH4_6g53610' => 'fve', 'FvH4_6g53620' => 'fve', 'FvH4_6g53651' => 'fve', 'FvH4_6g53660' => 'fve', 'Gohir.A07G043150' => 'ghi', 'Gohir.A10G001600' => 'ghi', 'Gohir.A11G224210' => 'ghi', 'Gohir.A11G278000' => 'ghi', 'Gohir.A12G196750' => 'ghi', 'Gohir.A12G196800' => 'ghi', 'Gohir.A13G096800' => 'ghi', 'Gohir.A13G160400' => 'ghi', 'Gohir.A13G160450' => 'ghi', 'Gohir.D07G047500' => 'ghi', 'Gohir.D07G047550' => 'ghi', 'Gohir.D10G001700' => 'ghi', 'Gohir.D11G237600' => 'ghi', 'Gohir.D11G288100' => 'ghi', 'Gohir.D12G199200' => 'ghi', 'Gohir.D12G199300' => 'ghi', 'Gohir.D13G101806' => 'ghi', 'Gohir.D13G165600' => 'ghi', 'Gohir.D13G165650' => 'ghi', 'Gorai.001G050600' => 'gra', 'Gorai.001G050700' => 'gra', 'Gorai.007G251000' => 'gra', 'Gorai.007G311900' => 'gra', 'Gorai.008G214400' => 'gra', 'Gorai.008G214500' => 'gra', 'Gorai.011G002100' => 'gra', 'Gorai.013G114100' => 'gra', 'Gorai.013G196900' => 'gra', 'Gorai.013G197000' => 'gra', 'GSVIVG01010911001' => 'vvi', 'GSVIVG01017506001' => 'vvi', 'HanXRQChr03g0067801' => 'han', 'HanXRQChr03g0067811' => 'han', 'HanXRQChr03g0076111' => 'han', 'HanXRQChr06g0171101' => 'han', 'HanXRQChr12g0365521' => 'han', 'HanXRQChr12g0377621' => 'han', 'HanXRQChr15g0470261' => 'han', 'HanXRQChr16g0498261' => 'han', 'HanXRQChr16g0513001' => 'han', 'HanXRQChr16g0524991' => 'han', 'HanXRQChr16g0525181' => 'han', 'HanXRQChr16g0525201' => 'han', 'HanXRQChr16g0525211' => 'han', 'HanXRQChr16g0525221' => 'han', 'HanXRQChr16g0525271' => 'han', 'HanXRQChr16g0525451' => 'han', 'HanXRQChr16g0525541' => 'han', 'HanXRQChr16g0525761' => 'han', 'HanXRQChr16g0526261' => 'han', 'Haze_19047' => 'cav', 'Hma1.2p1_0289F.1_g114240' => 'hma', 'Hma1.2p1_0432F.1_g152020' => 'hma', 'Hma1.2p1_0432F.1_g152025' => 'hma', 'Hma1.2p1_0461F.1_g157720' => 'hma', 'Hma1.2p1_0726F.1_g208920' => 'hma', 'Hma1.2p1_1045F.1_g251310' => 'hma', 'Hma1.2p1_1045F.1_g251330' => 'hma', 'Hma1.2p1_1404F.1_g281310' => 'hma', 'Hma1.2p1_1404F.1_g281320' => 'hma', 'Hma1.2p1_1404F.1_g281330' => 'hma', 'Hma1.2p1_1404F.1_g281360' => 'hma', 'Hma1.2p1_1883F.1_g306430' => 'hma', 'Hma1.2p1_1883F.1_g306440' => 'hma', 'Hma1.2p1_1883F.1_g306450' => 'hma', 'Hma1.2p1_1883F.1_g306465' => 'hma', 'Hma1.2p1_3648F.1_g337160' => 'hma', 'Lalb_Chr02g0157541' => 'lal', 'Lalb_Chr02g0157561' => 'lal', 'Lalb_Chr02g0157571' => 'lal', 'Lalb_Chr02g0157581' => 'lal', 'Lalb_Chr14g0365021' => 'lal', 'Lj1C976T13' => 'lonja', 'Lj2P385T13' => 'lonja', 'Lj3A384G19' => 'lonja', 'Lj3A385T7' => 'lonja', 'Lj3A390G10' => 'lonja', 'Lj3A395T7' => 'lonja', 'Lj3P394T10' => 'lonja', 'Lj4g0013904' => 'lja', 'Lj5A554T12' => 'lonja', 'Lj5C690T4' => 'lonja', 'Lj5E683T0' => 'lonja', 'Lj5g0022192' => 'lja', 'Lj5g0025357' => 'lja', 'Lj5P683G12' => 'lonja', 'Lj5P690T22' => 'lonja', 'Lj5P697T4' => 'lonja', 'Lj7A282G43' => 'lonja', 'Lj7A466G32' => 'lonja', 'Lj7C282T1' => 'lonja', 'Lj7C282T18' => 'lonja', 'Lj7C282T19' => 'lonja', 'Lj7C282T2' => 'lonja', 'Lj7P466T32' => 'lonja', 'Lj7P466T37' => 'lonja', 'Lj7P698T73' => 'lonja', 'Lj7P721T15' => 'lonja', 'Lj8C33T14' => 'lonja', 'Lj8C33T15' => 'lonja', 'Lj8C46T5' => 'lonja', 'Lj8P33T19' => 'lonja', 'Lj8P33T20' => 'lonja', 'Lsat_1_v5_gn_2_127801' => 'lsa', 'Lsat_1_v5_gn_2_127901' => 'lsa', 'Lsat_1_v5_gn_3_40560' => 'lsa', 'Lsat_1_v5_gn_9_51201' => 'lsa', 'Lsat_1_v5_gn_9_51261' => 'lsa', 'Lsat_1_v5_gn_9_51281' => 'lsa', 'Lsat_1_v5_gn_9_51301' => 'lsa', 'Lsat_1_v5_gn_9_51341' => 'lsa', 'Lsat_1_v5_gn_9_51401' => 'lsa', 'Lsat_1_v5_gn_9_51421' => 'lsa', 'Lsat_1_v5_gn_9_51461' => 'lsa', 'Lsat_1_v5_gn_9_51481' => 'lsa', 'Lsat_1_v5_gn_9_51501' => 'lsa', 'Lsat_1_v5_gn_9_51581' => 'lsa', 'Lsat_1_v5_gn_9_51601' => 'lsa', 'Manes.01G166900' => 'mes', 'Manes.06G131800' => 'mes', 'Manes.14G038100' => 'mes', 'MBI01_g31985_MAGBIO' => 'mbi', 'MBI05_g20724_MAGBIO' => 'mbi', 'MBI05_g28548_MAGBIO' => 'mbi', 'MBI06_g12313_MAGBIO' => 'mbi', 'MBI06_g12314_MAGBIO' => 'mbi', 'MBI06_g12315_MAGBIO' => 'mbi', 'MD13G1235000' => 'mdo', 'MD13G1235200' => 'mdo', 'MD13G1235400' => 'mdo', 'MD16G1239800' => 'mdo', 'MD16G1240000' => 'mdo', 'MD16G1240100' => 'mdo', 'MELO3C005495.2' => 'cme', 'Migut.F00127' => 'egut', 'Migut.F00518' => 'egut', 'Migut.F00520' => 'egut', 'Migut.F01199' => 'egut', 'Migut.F01251' => 'egut', 'Migut.F01252' => 'egut', 'Migut.F01253' => 'egut', 'Migut.F01254' => 'egut', 'Migut.J01512' => 'egut', 'Migut.J01513' => 'egut', 'Migut.J01514' => 'egut', 'Migut.J01668' => 'egut', 'Migut.J01669' => 'egut', 'MSTRG.27218' => 'ama', 'MSTRG.8593' => 'ama', 'Nitab4.5_0000032g0090' => 'nta', 'Nitab4.5_0000053g0120' => 'nta', 'Nitab4.5_0000096g0150' => 'nta', 'Nitab4.5_0000096g0170' => 'nta', 'Nitab4.5_0000096g0180' => 'nta', 'Nitab4.5_0000375g0090' => 'nta', 'Nitab4.5_0000413g0120' => 'nta', 'Nitab4.5_0000413g0140' => 'nta', 'Nitab4.5_0000936g0120' => 'nta', 'Nitab4.5_0002322g0160' => 'nta', 'Nitab4.5_0002322g0180' => 'nta', 'Nitab4.5_0002322g0190' => 'nta', 'Nitab4.5_0004055g0050' => 'nta', 'Nitab4.5_0004217g0020' => 'nta', 'Nitab4.5_0004217g0030' => 'nta', 'Nitab4.5_0004325g0010' => 'nta', 'Nitab4.5_0004790g0040' => 'nta', 'Nitab4.5_0005977g0010' => 'nta', 'Nitab4.5_0006345g0010' => 'nta', 'Nitab4.5_0006561g0070' => 'nta', 'Nitab4.5_0006666g0030' => 'nta', 'Nitab4.5_0009785g0010' => 'nta', 'Nitab4.5_0011101g0010' => 'nta', 'Nitab4.5_0013676g0010' => 'nta', 'Nn3g18583' => 'nnu', 'Nn5g30450' => 'nnu', 'Nn8g41006' => 'nnu', 'Nn8g41008' => 'nnu', 'Nn8g41009' => 'nnu', 'Oeu052797.1' => 'oeu', 'Oeu060862.1' => 'oeu', 'Oeu060863.1' => 'oeu', 'Os01g0379400' => 'osa', 'Os01g0876300' => 'osa', 'Os02g0630000' => 'osa', 'Os08g0529300' => 'osa', 'Os08g0529400' => 'osa', 'Peaxi162Scf00111g01479' => 'pax', 'Peaxi162Scf00257g00220' => 'pax', 'Peaxi162Scf00320g00071' => 'pax', 'Peaxi162Scf00332g10026' => 'pax', 'Peaxi162Scf00332g10027' => 'pax', 'Peaxi162Scf00725g00022' => 'pax', 'Peaxi162Scf00725g00025' => 'pax', 'Peaxi162Scf00725g00112' => 'pax', 'Peaxi162Scf00725g00113' => 'pax', 'Peaxi162Scf00725g00213' => 'pax', 'Peaxi162Scf00725g00215' => 'pax', 'PGR044G0383' => 'pgr', 'PGSC0003DMG400007218' => 'stu', 'PGSC0003DMG400007221' => 'stu', 'PGSC0003DMG400014133' => 'stu', 'PGSC0003DMG400021824' => 'stu', 'PGSC0003DMG400029956' => 'stu', 'PGSC0003DMG400030719' => 'stu', 'PGSC0003DMG400040438' => 'stu', 'Potri.003G215900' => 'ptr', 'Potri.004G086050' => 'ptr', 'Potri.004G232700' => 'ptr', 'Potri.005G043500' => 'ptr', 'Potri.005G254500' => 'ptr', 'Potri.005G254633' => 'ptr', 'Potri.006G071100' => 'ptr', 'Potri.010G254000' => 'ptr', 'Potri.013G065500' => 'ptr', 'Potri.013G067800' => 'ptr', 'Potri.018G132800' => 'ptr', 'Prupe.1G066100' => 'ppe', 'Prupe.1G066200' => 'ppe', 'Prupe.1G066300' => 'ppe', 'Prupe.1G066400' => 'ppe', 'PSO017G0065' => 'pso', 'PSO017G0843' => 'pso', 'PSO017G2545' => 'pso', 'PSO017G3374' => 'pso', 'PSO017G5176' => 'pso', 'PSO017G7307' => 'pso', 'PSO063G0110' => 'pso', 'PSO063G0522' => 'pso', 'PSO063G0545' => 'pso', 'PSO063G0730' => 'pso', 'PSO063G0812' => 'pso', 'PSO063G1615' => 'pso', 'PSO063G6010' => 'pso', 'PSO063G7315' => 'pso', 'PSO063G7516' => 'pso', 'PSO135G0233' => 'pso', 'PSO144G0087' => 'pso', 'PSO170G0160' => 'pso', 'PSO170G0618' => 'pso', 'PSO170G1152' => 'pso', 'PSO170G1169' => 'pso', 'PSO170G1666' => 'pso', 'PSO170G1835' => 'pso', 'PSO170G2464' => 'pso', 'PSO170G3399' => 'pso', 'PSO170G3762' => 'pso', 'PSO170G4299' => 'pso', 'PSO210G5658' => 'pso', 'PSO210G6465' => 'pso', 'PSO210G6997' => 'pso', 'PSO210G7406' => 'pso', 'PSO229G0005' => 'pso', 'PSO232G0003' => 'pso', 'PSO232G0005' => 'pso', 'PSO236G0001' => 'pso', 'PSO325G0007' => 'pso', 'PSO339G0480' => 'pso', 'PSO339G5554' => 'pso', 'PSO339G6520' => 'pso', 'PSO356G0013' => 'pso', 'PSO381G0006' => 'pso', 'PSO421G0012' => 'pso', 'PSO421G0182' => 'pso', 'PSO421G0261' => 'pso', 'PSO424G0001' => 'pso', 'PSO478G0543' => 'pso', 'PSO478G3844' => 'pso', 'PSO541G0639' => 'pso', 'PSO541G1214' => 'pso', 'PSO541G1803' => 'pso', 'PSO541G2189' => 'pso', 'PSO541G2744' => 'pso', 'PSO541G3103' => 'pso', 'PSO541G4226' => 'pso', 'PSO541G6017' => 'pso', 'PSO541G6162' => 'pso', 'PSO541G6413' => 'pso', 'PSO542G0001' => 'pso', 'PSO566G0095' => 'pso', 'PSO566G0320' => 'pso', 'PSO593G0001' => 'pso', 'PSO601G0014' => 'pso', 'PSO648G0127' => 'pso', 'PSO675G0037' => 'pso', 'PSO675G0071' => 'pso', 'PSO675G0757' => 'pso', 'PSO675G0924' => 'pso', 'PSO675G1763' => 'pso', 'PSO675G1828' => 'pso', 'PSO675G2119' => 'pso', 'PSO675G4899' => 'pso', 'PSO675G7943' => 'pso', 'PSO675G8313' => 'pso', 'PSO675G8555' => 'pso', 'PSO724G0320' => 'pso', 'PSO724G0409' => 'pso', 'PSO729G0071' => 'pso', 'PSO729G0152' => 'pso', 'PSO729G0187' => 'pso', 'PSO732G0038' => 'pso', 'PSO782G0631' => 'pso', 'PSO782G0917' => 'pso', 'PSO782G1217' => 'pso', 'PSO782G1546' => 'pso', 'PSO782G2883' => 'pso', 'PSO782G4200' => 'pso', 'PSO782G4774' => 'pso', 'PSO782G4862' => 'pso', 'PSO832G0283' => 'pso', 'PSO832G3931' => 'pso', 'QL05p088450' => 'qlo', 'QL11p009388' => 'qlo', 'RcHm_v2.0_Chr2g0174451' => 'rch', 'RcHm_v2.0_Chr2g0174511' => 'rch', 'RcHm_v2.0_Chr2g0174531' => 'rch', 'RcHm_v2.0_Chr2g0174701' => 'rch', 'RcHm_v2.0_Chr2g0174881' => 'rch', 'RcHm_v2.0_Chr2g0174951' => 'rch', 'RcHm_v2.0_Chr4g0387951' => 'rch', 'RcHm_v2.0_Chr4g0388001' => 'rch', 'RcHm_v2.0_Chr4g0388011' => 'rch', 'RcHm_v2.0_Chr4g0388051' => 'rch', 'RcHm_v2.0_Chr4g0388631' => 'rch', 'RcHm_v2.0_Chr4g0388641' => 'rch', 'RcHm_v2.0_Chr4g0388661' => 'rch', 'RcHm_v2.0_Chr4g0388801' => 'rch', 'RcHm_v2.0_Chr4g0396041' => 'rch', 'RcHm_v2.0_Chr4g0396501' => 'rch', 'RcHm_v2.0_Chr4g0396941' => 'rch', 'RcHm_v2.0_Chr4g0398001' => 'rch', 'RcHm_v2.0_Chr4g0398011' => 'rch', 'RcHm_v2.0_Chr4g0398041' => 'rch', 'RcHm_v2.0_Chr4g0398061' => 'rch', 'RcHm_v2.0_Chr4g0398071' => 'rch', 'RcHm_v2.0_Chr4g0398091' => 'rch', 'RcHm_v2.0_Chr4g0398111' => 'rch', 'RcHm_v2.0_Chr4g0399001' => 'rch', 'RcHm_v2.0_Chr4g0444981' => 'rch', 'RcHm_v2.0_Chr5g0020021' => 'rch', 'RcHm_v2.0_Chr5g0041051' => 'rch', 'RcHm_v2.0_Chr5g0059531' => 'rch', 'RcHm_v2.0_Chr6g0264241' => 'rch', 'Rhsim01G0005800' => 'rsi', 'Rhsim01G0013300' => 'rsi', 'Rhsim01G0013400' => 'rsi', 'Rhsim01G0013500' => 'rsi', 'Rhsim01G0013600' => 'rsi', 'Rhsim01G0013700' => 'rsi', 'Rhsim01G0013800' => 'rsi', 'Rhsim01G0013900' => 'rsi', 'Rhsim01G0014000' => 'rsi', 'Rhsim01G0014100' => 'rsi', 'Rhsim01G0014200' => 'rsi', 'Rhsim01G0014500' => 'rsi', 'Rhsim01G0014600' => 'rsi', 'Rhsim01G0014700' => 'rsi', 'Rhsim01G0014800' => 'rsi', 'Rhsim01G0014900' => 'rsi', 'Rhsim01G0015000' => 'rsi', 'Rhsim01G0016500' => 'rsi', 'Rhsim01G0016600' => 'rsi', 'Rhsim01G0016700' => 'rsi', 'Rhsim01G0016800' => 'rsi', 'Rhsim01G0016900' => 'rsi', 'Rhsim01G0017000' => 'rsi', 'Rhsim01G0017100' => 'rsi', 'Rhsim01G0017500' => 'rsi', 'Rhsim01G0017700' => 'rsi', 'Rhsim01G0017800' => 'rsi', 'Rhsim01G0017900' => 'rsi', 'Rhsim01G0018000' => 'rsi', 'Rhsim01G0018100' => 'rsi', 'Rhsim01G0018200' => 'rsi', 'Rhsim01G0018400' => 'rsi', 'Rhsim01G0018700' => 'rsi', 'Rhsim03G0161800' => 'rsi', 'Rhsim03G0161900' => 'rsi', 'Rhsim03G0162000' => 'rsi', 'Rhsim03G0162100' => 'rsi', 'Rhsim03G0162200' => 'rsi', 'Rhsim03G0162300' => 'rsi', 'Rhsim03G0162400' => 'rsi', 'Rhsim03G0248800' => 'rsi', 'Rhsim03G0248900' => 'rsi', 'Rhsim03G0249000' => 'rsi', 'Rhsim03G0249200' => 'rsi', 'Rhsim03G0249300' => 'rsi', 'Rhsim04G0064500' => 'rsi', 'Rhsim04G0064600' => 'rsi', 'Rhsim04G0064700' => 'rsi', 'Rhsim04G0064800' => 'rsi', 'Rhsim04G0065200' => 'rsi', 'Rhsim07G0025700' => 'rsi', 'Rhsim07G0210200' => 'rsi', 'Rhsim08G0073100' => 'rsi', 'Rhsim08G0168000' => 'rsi', 'Rhsim08G0251200' => 'rsi', 'Rhsim10G0184200' => 'rsi', 'Rhsim10G0184300' => 'rsi', 'Rhsim10G0184400' => 'rsi', 'Rhsim10G0184800' => 'rsi', 'Rhsim10G0184900' => 'rsi', 'Rhsim11G0068100' => 'rsi', 'Rhsim11G0068200' => 'rsi', 'Rhsim11G0068300' => 'rsi', 'Rhsim11G0068400' => 'rsi', 'Rhsim11G0068600' => 'rsi', 'Rhsim11G0068800' => 'rsi', 'Rhsim11G0068900' => 'rsi', 'Rhsim11G0069100' => 'rsi', 'Rhsim11G0078600' => 'rsi', 'Rhsim12G0162800' => 'rsi', 'Rhsim13G0017400' => 'rsi', 'RhsimUnG0091800' => 'rsi', 'RhsimUnG0091900' => 'rsi', 'RhsimUnG0092100' => 'rsi', 'RhsimUnG0092200' => 'rsi', 'Sabra01G0007300' => 'sbr', 'Sabra01G0119700' => 'sbr', 'Sabra01G0178200' => 'sbr', 'Sabra03G0161100' => 'sbr', 'Sabra05G0040400' => 'sbr', 'Sabra10G0197600' => 'sbr', 'Sabra13G0057300' => 'sbr', 'Sabra13G0059200' => 'sbr', 'Sabra18G0112500' => 'sbr', 'SalBow4G1083' => 'sbo', 'Sc01g0001610' => 'sci', 'Sc01g0008370' => 'sci', 'Sc01g0008380' => 'sci', 'Sc09g0004440' => 'sci', 'Sc23g0006800' => 'sci', 'Sed0002650' => 'sed', 'SGA_v2.0_scaffold136G35012' => 'sas', 'SGA_v2.0_scaffold136G35013' => 'sas', 'SGA_v2.0_scaffold136G35014' => 'sas', 'SGA_v2.0_scaffold136G35021' => 'sas', 'SGA_v2.0_scaffold136G35030' => 'sas', 'SGA_v2.0_scaffold18G08492' => 'sas', 'SGA_v2.0_scaffold18G08493' => 'sas', 'SGA_v2.0_scaffold3565G54362' => 'sas', 'SGA_v2.0_scaffold55G19780' => 'sas', 'SGA_v2.0_scaffold60G20808' => 'sas', 'SGA_v2.0_scaffold69G23237' => 'sas', 'SGA_v2.0_scaffold69G23275' => 'sas', 'Solyc03g117270.1' => 'sly', 'Solyc04g071270.1' => 'sly', 'Solyc05g051583.1' => 'sly', 'Solyc05g051595.1' => 'sly', 'Solyc07g015800.1' => 'sly', 'Sopen03g036160' => 'spe', 'Sopen05g030050' => 'spe', 'Sopen07g005630' => 'spe', 'TAR626G0460' => 'tar', 'TAR626G1237' => 'tar', 'TAR626G1239' => 'tar', 'TAR626G1309' => 'tar', 'TAR626G1797' => 'tar', 'TAR626G1986' => 'tar', 'TAR627G0384' => 'tar', 'TAR627G1137' => 'tar', 'THA.LOC104801597' => 'tha', 'Thecc.03G149500' => 'tca', 'Thecc.03G149600' => 'tca', 'Thecc.05G237800' => 'tca', 'Thecc.05G237900' => 'tca', 'Thecc.05G238100' => 'tca', 'Thecc.05G238200' => 'tca', 'Thecc.05G238300' => 'tca', 'Thecc.05G238400' => 'tca', 'Thecc.05G238500' => 'tca', 'Thecc.05G238600' => 'tca', 'Thecc.05G262100' => 'tca', 'Thecc.05G282300' => 'tca', 'Thecc.05G282400' => 'tca', 'Thecc.06G054800' => 'tca', 'Thecc.06G054900' => 'tca', 'Thecc.07G025800' => 'tca', 'Thhalv10015553m.g' => 'esa', 'vmacro06136' => 'vma', 'vmacro06138' => 'vma', 'vmacro13067' => 'vma', 'vmacro19357' => 'vma', 'Zm00001eb146000' => 'zma', 'Zm00001eb366400' => 'zma' ) $gf_id = 'HOM05D000664' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000664' ) $data_identifier = 'HOM05D000664' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 4, 'aar' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 3, 'aly' => (int) 1, 'aox' => (int) 7, 'arhy' => (int) 1, 'ath' => (int) 1, 'acertr' => (int) 6, 'cqu' => (int) 15, 'bca' => (int) 3, 'bol' => (int) 2, 'bra' => (int) 1, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 1, 'cru' => (int) 1, 'ccan' => (int) 16, 'cde' => (int) 1, 'cfa' => (int) 1, 'ccl' => (int) 7, 'cil' => (int) 3, 'cla' => (int) 1, 'col' => (int) 36, 'cpa' => (int) 2, 'csa' => (int) 1, 'camsi' => (int) 15, 'dca' => (int) 27, 'din' => (int) 7, 'dzi' => (int) 19, 'eca' => (int) 18, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 98, 'fve' => (int) 48, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 2, 'han' => (int) 19, 'cav' => (int) 1, 'hma' => (int) 16, 'lal' => (int) 5, 'lonja' => (int) 28, 'lja' => (int) 3, 'lsa' => (int) 15, 'mes' => (int) 3, 'mbi' => (int) 6, 'mdo' => (int) 6, 'cme' => (int) 1, 'egut' => (int) 13, 'ama' => (int) 2, 'nta' => (int) 24, 'nnu' => (int) 5, 'oeu' => (int) 3, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 1, 'stu' => (int) 7, 'ptr' => (int) 11, 'ppe' => (int) 4, 'pso' => (int) 90, 'qlo' => (int) 2, 'rch' => (int) 30, 'rsi' => (int) 75, 'sbr' => (int) 9, 'sbo' => (int) 1, 'sci' => (int) 5, 'sed' => (int) 1, 'sas' => (int) 12, 'sly' => (int) 5, 'spe' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 1, 'tca' => (int) 16, 'esa' => (int) 1, 'vma' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb366400' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1